RetrogeneDB ID: | retro_rnor_951 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:24354721..24355119(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 51.08 % |
Parental protein coverage: | 52.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LPKVRAQGETEVLKVIRTGKRKK-KAWKRMVTKVCFVGDGFTRKPPKYERFIRPM-GLRFKKAHVTHPEL |
LP.V.....T.VLKVI.T......KAW.R.VT..C.VGD..TR.P.K.ERFIRP..G.R..KAH.T.PEL | |
Retrocopy | LPSVCL*EVTVVLKVIQTXXXXX>KAWMRLVTEICVVGDDITRIPHKCERFIRPV<GPRPQKAHITYPEL |
Parental | KATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPE-NDGCINA |
KATF....L....N...P.Y..L.V.....VI..N...LGL....G...W.KYAQVTNNPE...GC.NA | |
Retrocopy | KATFPCQYLFLTRN-HQPHYIQLWV--RPPVIALNENDLGLLLKVGGILW*KYAQVTNNPE<KEGCTNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |