RetrogeneDB ID: | retro_tbel_3016 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_126446:53170..53684(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 78.86 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMK-KTIKMHE |
MPQ.......RK.Y.Y.LDYHEKKRKKES.EAHE.SKKAKKMIGLKA.LYHKQ..AE.IQMK.KTIKMHE | |
Retrocopy | MPQXXXXXXXRKHYRYHLDYHEKKRKKESWEAHECSKKAKKMIGLKAELYHKQCRAENIQMK<KTIKMHE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLS-NMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
KRN.KQ.NDEKTPQGAVPAYLL.R.GQS.AKVLS.NMIKQK.KEKAGKWEVPLPKVR.QGETEVLKVI.T | |
Retrocopy | KRNIKQNNDEKTPQGAVPAYLLAR-GQS*AKVLS<NMIKQKWKEKAGKWEVPLPKVRVQGETEVLKVIQT |
Parental | GKREKAWKRMVTKVCF--GDFT-KPPKYERFIRPM |
GKR.KAWK.M.T.V.F...DFT.KPPK.ER.IRPM | |
Retrocopy | GKRKKAWKSMITEVRFVGDDFTRKPPKHERVIRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |