RetrogeneDB ID: | retro_cfam_49 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:108223416..108224199(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007385 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
PQNEYIELH.KRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR | |
Retrocopy | PQNEYIELHQKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
Parental | NTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKR |
NTKQKNDEKTP.GAVPAYLLDREGQ.RAKVLSNMIKQKRKEKA.KWEVPLPKVRAQGETEVLKVIRTGKR | |
Retrocopy | NTKQKNDEKTPEGAVPAYLLDREGQFRAKVLSNMIKQKRKEKAAKWEVPLPKVRAQGETEVLKVIRTGKR |
Parental | KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL |
KKKAWKRMVTKVCFVGDGFTRKPPKYERFIR.MGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL | |
Retrocopy | KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRSMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL |
Parental | GVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
GVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV | |
Retrocopy | GVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 6 .01 RPM |
SRP017611_brain | 0 .00 RPM | 2 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .23 RPM |
SRP017611_liver | 0 .07 RPM | 5 .73 RPM |