RetrogeneDB ID: | retro_rnor_2630 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:61527886..61528361(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 86.96 % |
Parental protein coverage: | 61.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTR-KPPKYERF |
LSN.IKQK.KEKAGKWEVPLPKVRAQGETEVLKV.RTGK.KKK.WKRMVTK.CFVGDGFTR.K.PKYERF | |
Retrocopy | LSNTIKQKQKEKAGKWEVPLPKVRAQGETEVLKVNRTGKGKKKSWKRMVTKGCFVGDGFTR<KTPKYERF |
Parental | IRPMGLRFKKAHVTHPELKATFCLPILGVKKNPS-SPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWG |
IRPMGL.FKK.HVT..ELKATFCLP.LGVKKNPS..PLYTTLGVITKGTVIEVNV.ELGLVTQGGKVI.G | |
Retrocopy | IRPMGLHFKKSHVTQLELKATFCLPMLGVKKNPS<TPLYTTLGVITKGTVIEVNVNELGLVTQGGKVIRG |
Parental | KYAQVTNNPENDGCINAVLLV |
K.AQ.TNN.ENDG.INAVLLV | |
Retrocopy | KCAQGTNNLENDGSINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |