RetrogeneDB ID: | retro_tbel_4491 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_85558:492..1013(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 86.86 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MP.N.YIELHRK.YGYRLDYHEK.RKKE.REAH.RSKKAKKMIGLK.KL.HKQRHAEKIQMKKTIKMHEK | |
Retrocopy | MP*NKYIELHRKHYGYRLDYHEKTRKKEHREAHDRSKKAKKMIGLKTKLCHKQRHAEKIQMKKTIKMHEK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVR-AQGETEVLKVIRTG |
RNTKQKNDEKTPQGA.PAYL.DREGQSR.KVLSNMIKQKRKEKAGKWEVPLPKV..AQGETEV..VI.TG | |
Retrocopy | RNTKQKNDEKTPQGAAPAYL*DREGQSRTKVLSNMIKQKRKEKAGKWEVPLPKVE<AQGETEVVIVIQTG |
Parental | KR-EKAWKRMVTKVCF-GD-FT-KPPKYERFIRPM |
KR..KAWKRMVTKVCF.GD.FT.KPPKYER..RPM | |
Retrocopy | KRKKKAWKRMVTKVCFVGDGFTRKPPKYERLSRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |