RetrogeneDB ID: | retro_rnor_2817 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:73456523..73457078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 80.54 % |
Parental protein coverage: | 70.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAW |
...KTPQGAVPAYLL.RE...RAKVLSN.IKQK.K.KAGKWEVPLPKV.AQGE.EVLKV.RTGKRKKK.W | |
Retrocopy | EKRKTPQGAVPAYLLHREWYWRAKVLSNRIKQKQKVKAGKWEVPLPKVHAQGESEVLKVVRTGKRKKKSW |
Parental | KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITK |
.RM.TKVCF.GDGFTRKPPKYER.IR.MGL.FKKA.V.HPELKAT.CLPILGVKKNPS.PLYTTLGV.TK | |
Retrocopy | NRMLTKVCFAGDGFTRKPPKYERPIRLMGLHFKKAYVIHPELKATICLPILGVKKNPSNPLYTTLGVSTK |
Parental | GTVIEVNVSE-LGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
GT.......E..GLVTQGG.VIWGKYAQVTNNPENDGCI.AVLLV | |
Retrocopy | GTTGH*SACEGVGLVTQGGRVIWGKYAQVTNNPENDGCIKAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .07 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |