RetrogeneDB ID: | retro_tbel_3040 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_127424:296041..296506(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 80.12 % |
Parental protein coverage: | 60.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMKKTIKMHE |
MPQNEY.E.H.KRY.YRLDYHEKKRKKES.E.HERSKKAKK.MIGLKAKL.HKQR.AE..........HE | |
Retrocopy | MPQNEYTESHHKRYQYRLDYHEKKRKKESQEGHERSKKAKK>MIGLKAKLCHKQRQAEXXXXXXXXXXHE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ-GETE-VLKVIR |
KRNTKQKNDEKTPQGAVPAYL.DREGQSRAKVLSNMIKQKRKEK.GKWEVPLPKVRAQ.G.TE.VLKVIR | |
Retrocopy | KRNTKQKNDEKTPQGAVPAYLSDREGQSRAKVLSNMIKQKRKEKVGKWEVPLPKVRAQ<GGTE<VLKVIR |
Parental | TGKREKA-WKRMV-TKVCFGD |
TGKR.KA...RMV.TK.C..D | |
Retrocopy | TGKRKKA<MRRMV<TKICL*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |