Parental gene:

ENSCJAG00000016874

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:133620995..133629700(-)


>ENSCJAG00000016874
ATGCCACAGAACGAATATATAGAATTACATCGTAAACGCTATGGATACCGTTTGGATTACCATGAGAAAAAGAGAAAGAA
GGAAAGTCGAGAGGCTCATGAACGTTCAAAGAAGGCAAAGAAAATGATTGGTCTGAAAGCTAAGCTTTACCATAAACAGC
GCCACGCTGAGAAAATACAAATGAAAAAGACTATCAAGATGCATGAAAAGAGAAACACCAAACAAAAGAATGATGAGAAG
ACTCCACAGGGAGCAGTACCTGCCTATCTTCTGGACAGAGAAGGACAATCTCGAGCTAAAGTACTTTCCAATATGATTAA
ACAGAAACGAAAAGAGAAGGCGGGAAAATGGGAAGTCCCTCTGCCTAAAGTCCGTGCCCAGGGAGAAACAGAAGTATTAA
AAGTTATTCGAACAGGAAAGAGAAAGAAGAAGGCATGGAAGAGGATGGTTACTAAAGTATGCTTTGTTGGAGATGGCTTT
ACAAGAAAACCACCTAAATATGAAAGATTCATAAGGCCAATGGGCTTGCGTTTCAAGAAAGCCCATGTGACACATCCTGA
ACTGAAAGCCACCTTTTGCCTACCAATACTTGGTGTAAAGAAGAATCCCTCATCCCCACTGTATACAACTTTGGGTGTTA
TTACCAAAGGTACTGTCATTGAGGTAAATGTGAGCGAACTGGGCCTTGTGACGCAAGGAGGCAAAGTTATTTGGGGAAAG
TATGCCCAGGTTACGAACAATCCTGAAAATGATGGATGCATAAATGCAGTCTTACTGGTTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 44 .43 RPM
SRP051959_skeletal_muscle 57 .39 RPM
SRP051959_lymph_node 37 .81 RPM
SRP051959_lung 42 .96 RPM
SRP051959_liver 51 .64 RPM
SRP051959_kidney 45 .08 RPM
SRP051959_heart 43 .62 RPM
SRP051959_colon 29 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000593 possible_ortholog 5 retrogenes
retro_amel_151, retro_amel_1635, retro_amel_1729, retro_amel_180, retro_amel_734,
Bos taurus ENSBTAG00000003066 possible_ortholog 3 retrogenes
retro_btau_326, retro_btau_931, retro_btau_949,
Canis familiaris ENSCAFG00000008311 possible_ortholog 4 retrogenes
retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Choloepus hoffmanni ENSCHOG00000012126 possible_ortholog 2 retrogenes
retro_chof_1702, retro_chof_1947,
Cavia porcellus ENSCPOG00000006648 ortholog_one2one 1 retrogene
retro_cpor_672,
Dasypus novemcinctus ENSDNOG00000010615 ortholog_one2many 1 retrogene
retro_dnov_428,
Equus caballus ENSECAG00000005528 possible_ortholog 1 retrogene
retro_ecab_445,
Echinops telfairi ENSETEG00000004095 ortholog_one2many 13 retrogenes
retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus ENSFCAG00000011978 possible_ortholog 1 retrogene
retro_fcat_98,
Homo sapiens ENSG00000164346 ortholog_one2many 4 retrogenes
retro_hsap_1144, retro_hsap_1577, retro_hsap_4731, retro_hsap_493,
Gorilla gorilla ENSGGOG00000014365 ortholog_one2many 6 retrogenes
retro_ggor_1200, retro_ggor_2136, retro_ggor_2939, retro_ggor_463, retro_ggor_824, retro_ggor_891,
Loxodonta africana ENSLAFG00000009910 ortholog_one2many 4 retrogenes
retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii ENSMEUG00000015798 possible_ortholog 3 retrogenes
retro_meug_1191, retro_meug_1408, retro_meug_161,
Microcebus murinus ENSMICG00000000752 ortholog_one2many 3 retrogenes
retro_mmur_1074, retro_mmur_374, retro_mmur_925,
Myotis lucifugus ENSMLUG00000014464 possible_ortholog 4 retrogenes
retro_mluc_1596, retro_mluc_1664, retro_mluc_757, retro_mluc_917,
Macaca mulatta ENSMMUG00000011196 ortholog_one2many 6 retrogenes
retro_mmul_1984, retro_mmul_2219, retro_mmul_2523, retro_mmul_408, retro_mmul_441, retro_mmul_890,
Monodelphis domestica ENSMODG00000001900 ortholog_one2many 4 retrogenes
retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mustela putorius furo ENSMPUG00000005795 possible_ortholog 5 retrogenes
retro_mputfur_153, retro_mputfur_250, retro_mputfur_510, retro_mputfur_573, retro_mputfur_690,
Mus musculus ENSMUSG00000060739 possible_ortholog 25 retrogenes
retro_mmus_1121, retro_mmus_1329, retro_mmus_1472, retro_mmus_1558, retro_mmus_1587, retro_mmus_1751, retro_mmus_1785, retro_mmus_1819, retro_mmus_1890, retro_mmus_2426, retro_mmus_2617, retro_mmus_2706, retro_mmus_2806, retro_mmus_3105, retro_mmus_3246, retro_mmus_3302, retro_mmus_3340, retro_mmus_3485, retro_mmus_3671, retro_mmus_3713, retro_mmus_402, retro_mmus_518, retro_mmus_674, retro_mmus_690, retro_mmus_890,
Nomascus leucogenys ENSNLEG00000005046 possible_ortholog 10 retrogenes
retro_nleu_1026, retro_nleu_1507, retro_nleu_1758, retro_nleu_1759, retro_nleu_1929, retro_nleu_2255, retro_nleu_2565, retro_nleu_2675, retro_nleu_768, retro_nleu_943,
Oryctolagus cuniculus ENSOCUG00000006536 ortholog_many2many 6 retrogenes
retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Ochotona princeps ENSOPRG00000001867 ortholog_one2many 7 retrogenes
retro_opri_1145, retro_opri_1195, retro_opri_254, retro_opri_427, retro_opri_654, retro_opri_778, retro_opri_83,
Pongo abelii ENSPPYG00000025926 ortholog_one2many 8 retrogenes
retro_pabe_1300, retro_pabe_1715, retro_pabe_240, retro_pabe_3434, retro_pabe_3570, retro_pabe_3678, retro_pabe_950, retro_pabe_976,
Pan troglodytes ENSPTRG00000016990 ortholog_one2many 6 retrogenes
retro_ptro_1063, retro_ptro_1713, retro_ptro_2105, retro_ptro_3146, retro_ptro_372, retro_ptro_779,
Pteropus vampyrus ENSPVAG00000005396 possible_ortholog 2 retrogenes
retro_pvam_1352, retro_pvam_476,
Rattus norvegicus ENSRNOG00000016530 possible_ortholog 15 retrogenes
retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus ENSSARG00000009424 possible_ortholog 4 retrogenes
retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sarcophilus harrisii ENSSHAG00000017654 ortholog_one2many 5 retrogenes
retro_shar_292, retro_shar_336, retro_shar_495, retro_shar_679, retro_shar_745,
Sus scrofa ENSSSCG00000014075 possible_ortholog 2 retrogenes
retro_sscr_287, retro_sscr_288,
Ictidomys tridecemlineatus ENSSTOG00000007959 possible_ortholog 3 retrogenes
retro_itri_1630, retro_itri_1638, retro_itri_860,
Tupaia belangeri ENSTBEG00000012978 ortholog_one2many 56 retrogenes
retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,
Tursiops truncatus ENSTTRG00000005219 possible_ortholog 1 retrogene
retro_ttru_1468,
Vicugna pacos ENSVPAG00000007368 possible_ortholog 2 retrogenes
retro_vpac_111, retro_vpac_528,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_116 98.85 100.00
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Download FASTA sequences of all ENSCJAG00000016874 retrocopies