RetrogeneDB ID: | retro_rnor_2745 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:93738642..93739128(-) | ||
Located in intron of: | ENSRNOG00000018931 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 75.93 % |
Parental protein coverage: | 62.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKR |
K.I.LKAK.YHKQ.HAEKI.MKKTI.MHEKRNTKQKD.EK.PQGAVPAYLLDR.GQ.RAKVLSNMIKQK. | |
Retrocopy | KKIDLKAKFYHKQCHAEKI*MKKTINMHEKRNTKQKDGEKSPQGAVPAYLLDRKGQWRAKVLSNMIKQK* |
Parental | KEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK |
KEK..KWEVPLPKV.A.GET...K..........AWKRMVTKVCFVGDGFTRK.PK.ERFIRPMGL.FKK | |
Retrocopy | KEKVVKWEVPLPKVCA*GETKYGKLFEQXXXXXEAWKRMVTKVCFVGDGFTRKQPK*ERFIRPMGLHFKK |
Parental | AHVTHPELKATFCLPILGVKKN |
..VT.P.LKA.FCL..L.VKKN | |
Retrocopy | TQVTQPKLKAPFCLSMLSVKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |