RetrogeneDB ID: | retro_rnor_945 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:108117510..108117968(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 63.52 % |
Parental protein coverage: | 59.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | IKQKRKEKAGKWEVPLPKVRAQ-GETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPM |
.........GKWEVPL.KV.AQ.GET.V.KVI.TGKR.KKAWK..VTKV..VGD..T.KPPK..RFIRP. | |
Retrocopy | VESRSTFQPGKWEVPLSKVPAQ<GET-VSKVIQTGKREKKAWKKPVTKVSSVGDSLTGKPPKCDRFIRPA |
Parental | GLRF-KKAHVTHPELKAT-FCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQ-GGKVIWGKY |
GLRF..KA.VTHPE.KAT.FCLP..G..K.PSSPLYTTLGVI.KG.........L..VTQ.G.KVIWG.. | |
Retrocopy | GLRF>TKARVTHPEPKATFFCLPVCGANKSPSSPLYTTLGVISKGAAVTERM*AL--VTQ<GEKVIWGQC |
Parental | AQVTNNPENDGCINAVLLV |
AQV..NPENDGC...VL.V | |
Retrocopy | AQVNHNPENDGCMSVVLPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .43 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .47 RPM | 10 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_402 |