Parental gene:

ENSOCUG00000006536

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018720:3429141..3433752(+)


>ENSOCUG00000006536
CCACAAAATGAATATATTGAATTACACCGTAAACGCTATGGGTACCGTTTGGATTACCATGAGAAAAAGAGAAAAAAGGA
AAGTCGGGAGGCTCATGAACGTTCAAAGAAAGCAAAAAAGATGATTGGTCTGAAGGCCAAGCTCTACCATAAGCAGCGCC
ATGCTGAGAAAATACAGATGAAAAAGACTATCAAGATGCATGAGAAGAGAAACACGAAACAAAAGAATGATGAAAAGACT
CCCAAGGGAGCAGTGCCTGCCTATCTGCTAGACAGAGAAGGACAGTCCCGAGCTAAAGTACTTTCCAACATGATTAAACA
AAAACGCAAAGAGAAGGCGGGAAAATGGGAAGTCCCTCTGCCTAAAGTTCGTGCCCAGGGAGAAACAGAAGTATTAAAAG
TTATTCGGACAGGGAAAAGAAAAAAGAAGGCATGGAAGAGGATGGTTACCAAAGTCTGCTTTGTTGGAGATGGCTTTACA
AGAAAACCACCTAAATATGAAAGATTCATTAGACCAATGGGCTTACGTTTTAAGAAGGCCCATGTAACACATCCAGAACT
GAAAGCCACCTTCTGTCTGCCAATACTTGGTGTAAAAAAGAATCCATCATCCCCATTATACACAACTCTGGGTGTAATTA
CTAAAGGTACTGTCATTGAGGTGAATGTGAGCGAGCTGGGCCTTGTGACGCAAGGAGGCAAGGTTATTTGGGGTAAGAAA
TATGCCCAGGTTACCAACAATCCTGAAAATGATGGATGCATAAATGCAGTCTTACTTGTTTGA

Library Parental gene expression (RPM)
SRP017611_liver 2 .62 RPM
SRP017611_kidney 7 .60 RPM
SRP017611_brain 7 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000593 possible_ortholog 5 retrogenes
Bos taurus ENSBTAG00000003066 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000008311 possible_ortholog 4 retrogenes
Choloepus hoffmanni ENSCHOG00000012126 possible_ortholog 2 retrogenes
Callithrix jacchus ENSCJAG00000016874 ortholog_many2many 1 retrogene
Cavia porcellus ENSCPOG00000006648 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000010615 ortholog_one2many 1 retrogene
Equus caballus ENSECAG00000005528 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000004095 ortholog_one2many 13 retrogenes
Felis catus ENSFCAG00000011978 possible_ortholog 1 retrogene
Homo sapiens ENSG00000164346 ortholog_one2many 4 retrogenes
Gorilla gorilla ENSGGOG00000014365 ortholog_one2many 6 retrogenes
Loxodonta africana ENSLAFG00000009910 ortholog_one2many 4 retrogenes
Macropus eugenii ENSMEUG00000015798 possible_ortholog 3 retrogenes
Microcebus murinus ENSMICG00000000752 ortholog_one2many 3 retrogenes
Myotis lucifugus ENSMLUG00000014464 possible_ortholog 4 retrogenes
Macaca mulatta ENSMMUG00000011196 ortholog_one2many 6 retrogenes
Monodelphis domestica ENSMODG00000001900 ortholog_one2many 4 retrogenes
Mustela putorius furo ENSMPUG00000005795 possible_ortholog 5 retrogenes
Mus musculus ENSMUSG00000060739 possible_ortholog 25 retrogenes
Nomascus leucogenys ENSNLEG00000005046 ortholog_one2many 10 retrogenes
Ochotona princeps ENSOPRG00000001867 ortholog_one2many 7 retrogenes
Pongo abelii ENSPPYG00000025926 ortholog_one2many 8 retrogenes
Pan troglodytes ENSPTRG00000016990 ortholog_one2many 6 retrogenes
Pteropus vampyrus ENSPVAG00000005396 possible_ortholog 2 retrogenes
Rattus norvegicus ENSRNOG00000016530 possible_ortholog 15 retrogenes
Sorex araneus ENSSARG00000009424 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000017654 ortholog_one2many 5 retrogenes
Sus scrofa ENSSSCG00000014075 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007959 ortholog_one2many 3 retrogenes
Tupaia belangeri ENSTBEG00000012978 ortholog_one2many 56 retrogenes
Tursiops truncatus ENSTTRG00000005219 possible_ortholog 1 retrogene
Vicugna pacos ENSVPAG00000007368 possible_ortholog 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_76 97.69 100.00
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2. retro_ocun_149 96.44 97.31
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3. retro_ocun_306 95.18 63.46
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4. retro_ocun_658 88.37 65.77
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5. retro_ocun_1591 77.12 58.08
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6. retro_ocun_1602 98.84 66.54
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Download FASTA sequences of all ENSOCUG00000006536 retrocopies