RetrogeneDB ID: | retro_ocun_1602 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018710:841391..841910(+) | ||
Located in intron of: | ENSOCUG00000000402 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000009337 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006536 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.84 % |
Parental protein coverage: | 66.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
PQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR | |
Retrocopy | PQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
Parental | NTKQKNDEKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKR |
NTKQKNDEKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEK.GKWEVPLPKVRAQGETEVLKVIRTGKR | |
Retrocopy | NTKQKNDEKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEKVGKWEVPLPKVRAQGETEVLKVIRTGKR |
Parental | KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPM |
KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRP. | |
Retrocopy | KKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .93 RPM | 7 .73 RPM |
SRP017611_kidney | 0 .81 RPM | 7 .60 RPM |
SRP017611_liver | 0 .92 RPM | 2 .62 RPM |