RetrogeneDB ID: | retro_tbel_2784 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_119065:11905..12288(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 69.92 % |
Parental protein coverage: | 51.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQNEYI.LH.K.YGY.L.YHEKKRKKES.E.HERSKKA.KMIGLKA.LYH.QRHAEKI.MKK..KM.EK | |
Retrocopy | MPQNEYIKLHHKHYGYHLGYHEKKRKKES*ETHERSKKA-KMIGLKANLYHNQRHAEKIEMKKAVKMREK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEK-AGKWEVPLPKVRAQGETEV |
RNTKQ..DEKTPQGA.PA....RE.....K..........K.K.AGKWEVPLPKVRAQGET.. | |
Retrocopy | RNTKQ-DDEKTPQGAGPACW--REDSPELKYFPI*LNKNGKRK<AGKWEVPLPKVRAQGETSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |