RetrogeneDB ID: | retro_rnor_1921 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:134314723..134315299(-) | ||
Located in intron of: | ENSRNOG00000048877 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 84.9 % |
Parental protein coverage: | 73.85 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | EKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
EKR.......EK.PQGAVPAYL.DRE.QSRAK.LSN.IKQKRKEKAGKWEV.LPKV.AQGETEVLKVI.T | |
Retrocopy | EKRQAEG*HEEKAPQGAVPAYLMDRERQSRAKILSNLIKQKRKEKAGKWEVSLPKVHAQGETEVLKVI*T |
Parental | GKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLY |
GKRKKKA.KR.VTKVCFVGDGFTRKP.KY.R.IRPMGLRFKKAHVTH.ELKATFCLPILGVK.NPSSP.Y | |
Retrocopy | GKRKKKA*KRIVTKVCFVGDGFTRKPSKYKRSIRPMGLRFKKAHVTHSELKATFCLPILGVK*NPSSPVY |
Parental | TTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
TTLGVI.KGTVIEVNVSELGLVTQGGKVIW.KYA.VTNNPEND.CINA.L.V | |
Retrocopy | TTLGVISKGTVIEVNVSELGLVTQGGKVIWEKYAPVTNNPENDACINAGLTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |