RetrogeneDB ID: | retro_etel_988 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_196995:3408..3825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | REGQSRAKVLSNMIKQ-KRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWK-RMVTKVCFVGDGF |
.E..S.AK...NMI.Q.K..EK.GKWE.PLP.....GETE.LKVIRT.KR.K.A.K.RMVTKV.FV..GF | |
Retrocopy | KEAWS*AKAFTNMINQ<KQREKVGKWEFPLPSL-CPGETEGLKVIRTEKREKEAGK>RMVTKVYFVVSGF |
Parental | TRKPPKYERFIXXXGLRF-KKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTV-IEVNVSELG |
T.KPPKYE.FI....L.F.KKAHVTHPELKATFCLPIL.VKKNP.SPL.TTLG.I..G...IEV.V.E.G | |
Retrocopy | TGKPPKYE*FIRPKALCF>KKAHVTHPELKATFCLPILVVKKNPLSPLDTTLGIIINGLA<IEVSVREQG |
Parental | LVTQ |
LVT. | |
Retrocopy | LVTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |