RetrogeneDB ID: | retro_rnor_1074 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:87357076..87357855(-) | ||
Located in intron of: | ENSRNOG00000049955 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 83.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRK--RYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQR-HAEKIQMKKTIKM |
MP.NE.IE.H.K..RY..RLDYHEKKRKK.GR.............GLKAKLYHKQ..HAEK.QMKK.IKM | |
Retrocopy | MPHNE*IEFHCK**RY-HRLDYHEKKRKKVGRPMIGQ-RRXXXXLGLKAKLYHKQH<HAEKTQMKKSIKM |
Parental | HEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIR |
HEKRNTKQKDDEKT.QGAVPAYLLDREGQ.RAKVLSN.IKQK.KEKAGKWEV.LPKV.AQG.TEVLKVI. | |
Retrocopy | HEKRNTKQKDDEKTLQGAVPAYLLDREGQLRAKVLSNVIKQKQKEKAGKWEVLLPKVCAQGKTEVLKVIQ |
Parental | TGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPL |
T..RK.KA.KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLP.LGVKKNPSSPL | |
Retrocopy | TERRKEKARKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPMLGVKKNPSSPL |
Parental | YTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
.TTLGVITKGTVIEVNV.ELGLVTQGGKVIWGK.AQVTNNPENDGCINAVLL. | |
Retrocopy | *TTLGVITKGTVIEVNVRELGLVTQGGKVIWGKCAQVTNNPENDGCINAVLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |