RetrogeneDB ID: | retro_tbel_4642 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_9566:83875..84391(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 75.43 % |
Parental protein coverage: | 66.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQNEYIELH.KRYGY.LDYHEKKRKK.S..AHE.SK.AK.MIGLKAKL.HKQRHAEKIQ...T..MHEK | |
Retrocopy | MPQNEYIELHHKRYGYHLDYHEKKRKKKSP*AHECSKRAKMMIGLKAKLCHKQRHAEKIQIERTVRMHEK |
Parental | RNTKQKNDE-KTPQGAVPAYLLDREGQS-RAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
R.T.....E.KTPQG.V.AYLLDREG.S.RAKVLSN.IKQKR.EKAG.WEVPLPKVRAQGET.VL.VI.T | |
Retrocopy | RST-KQKNE>KTPQGPVSAYLLDREG*S<RAKVLSNTIKQKREEKAGTWEVPLPKVRAQGETKVLTVI*T |
Parental | GKR-EKAWKRMVTKVCF---GDFTKPPKYERFIRP |
GKR..KAWKR.VTK..F...G...KPPK.ERFIRP | |
Retrocopy | GKRKKKAWKRRVTKIGFVAVGFTRKPPKHERFIRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |