RetrogeneDB ID: | retro_tbel_3298 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_136748:136956..137477(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 78.29 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQNEYI.LH.K.YGY.LDYHE.KRKKESREAHE...KAK.MIGLKAK.YHK..HA.KIQ.KKTIKMHEK | |
Retrocopy | MPQNEYI*LHHKGYGYCLDYHEIKRKKESREAHEHLEKAKMMIGLKAKCYHK*HHAKKIQIKKTIKMHEK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
.NT..KNDEKT.QGAVPAYLLDREGQS.AKVLSNMIKQKRKEKAGKWEVPLPK..AQGETE.LKVI.TGK | |
Retrocopy | KNTEKKNDEKTLQGAVPAYLLDREGQS*AKVLSNMIKQKRKEKAGKWEVPLPKILAQGETEILKVIQTGK |
Parental | -REKAWKRMVTK-VCF--GDFT-KPPKYERFIRPM |
.R.....R...K.VCF...DFT.KPPKYER.IRPM | |
Retrocopy | ERRRHERRWLQK<VCFVGDDFTRKPPKYERSIRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |