RetrogeneDB ID: | retro_rnor_2820 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:74781589..74782369(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 89.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSK-KAKKMIGLKAKLYHKQRHAEK-IQMKKTIKMH |
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHE.SK......IGLKAKLYHKQRHAEK.IQMK.TIKMH | |
Retrocopy | MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHECSK>RXXXXIGLKAKLYHKQRHAEK<IQMKTTIKMH |
Parental | EKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAG-KWEVPLPKVRAQGETEVLKVIR |
EK.NTKQKD..KTPQGAVP.YLLDREGQSRAKVL.NMIKQKRKEK.G.KWEVPLPKV.AQG.TEVLKVIR | |
Retrocopy | EKGNTKQKDE*KTPQGAVPVYLLDREGQSRAKVLYNMIKQKRKEKGG<KWEVPLPKVGAQGDTEVLKVIR |
Parental | TGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKA-HVTHPELKATFCLPILGVKKNPSSP |
TGKRKKKAWKRMVTKVCFVGDGF.RKPPKYERFIRPMGL.F....HVTHPELKATFCLPILGVKKNPSSP | |
Retrocopy | TGKRKKKAWKRMVTKVCFVGDGFARKPPKYERFIRPMGLCFXXX>HVTHPELKATFCLPILGVKKNPSSP |
Parental | LYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
L.T.LGVITKGTVI.VNV.ELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV | |
Retrocopy | LHTILGVITKGTVIKVNVNELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |