RetrogeneDB ID: | retro_etel_1786 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_296844:10405..11003(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 72.55 % |
Parental protein coverage: | 77.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPQNEHIELHRKRYGYRLDYHERKRKKESREAHERSKKAKKMIGLKAKLYH-KQRHAEKIQMKKTIKMHE |
.PQ.E.I.L....Y.Y..DYHE...K..SREAHE.SK.AKK.IGLKAKL.H.KQ.HAEKIQMKK.IKMHE | |
Retrocopy | LPQKEYINLYHTQYEYHMDYHEKEGK--SREAHEHSKTAKKLIGLKAKLCHNKQPHAEKIQMKKAIKMHE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK-RKEKAGKWEVPLPKVRAQG-ETEVLKVIR |
KRN.KQKNDEKTPQGAVPA.LLD..GQS.AKVLSNMIKQK..K....KWE.PLPKV.AQG.ETEVLK.IR | |
Retrocopy | KRNNKQKNDEKTPQGAVPAHLLDIQGQSQAKVLSNMIKQK<MKKNPEKWEIPLPKVCAQG<ETEVLKIIR |
Parental | TGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIXXXGLRFKKAHVTHPELKATFCLPILGVKK |
TGKRKKKAWKR...KVCF.GDGFT.KP..YE.FI...GL.FKK.H.THP.LK.T..LPILGVKK | |
Retrocopy | TGKRKKKAWKRIIPKVCFIGDGFTPKPQIYE*FIKPMGLHFKKVHSTHPKLKVTSRLPILGVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |