RetrogeneDB ID: | retro_rnor_2767 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:4328677..4329105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 80.82 % |
Parental protein coverage: | 55.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | WEVPLPKVRAQGET-EVLKVIRTGKRKK-KAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVT |
WEVPLPK..AQ..T.EVLKVI.T......KAWKRMVTKVCFVGDGFTRKPPKYERFIR.M.L.FKKAHVT | |
Retrocopy | WEVPLPKLHAQRIT>EVLKVI*TXXXXX>KAWKRMVTKVCFVGDGFTRKPPKYERFIRLMDLYFKKAHVT |
Parental | HPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCI |
HPELK....LPIL.VKKNPSSPLY..L.VI.KGTVIEVNV.ELGLVTQGGK.IWGKYAQVT.NPEN.GCI | |
Retrocopy | HPELKV*--LPILTVKKNPSSPLYIILVVIIKGTVIEVNVNELGLVTQGGKAIWGKYAQVTKNPENNGCI |
Parental | NAVLLV |
NAVLLV | |
Retrocopy | NAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .07 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |