RetrogeneDB ID: | retro_tbel_1940 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_6045:590880..591384(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 72.94 % |
Parental protein coverage: | 63.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IELHRKRYGYRLDYHEKKRKKESREAHERSKKAK-KMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQ |
IELH.KRY.Y.LD.HEKK.KKES.E....SKKAK.KM.GL.AKLYHKQRHAEKIQMKKTI.MHEKRNTKQ | |
Retrocopy | IELHHKRYEYHLDCHEKKGKKESQESCKHSKKAK<KMTGLQAKLYHKQRHAEKIQMKKTI*MHEKRNTKQ |
Parental | KNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPL-PKVRAQGETE--VLKVIRTGKRE |
KN.EKTPQGA.PAYLLDREGQSRAKVLSNMIKQKRKEKAGKWE.PL.PK...........LK........ | |
Retrocopy | KNAEKTPQGAAPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEAPL>PKFEPRKKQKH*ILKQRKPSFSV |
Parental | KAWKRMVTKVCF---GDFTKPPKYERFIRP |
...KRMVTKVCF...G...KPPKYERFIRP | |
Retrocopy | SCLKRMVTKVCFVGNGFTRKPPKYERFIRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |