RetrogeneDB ID: | retro_tbel_4028 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_5510:113344..113796(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 61.29 % |
Parental protein coverage: | 59.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | QNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKK-TIKMHEKR |
.N.Y..LHR.......D....K..KE.......S.......G.KAKL.HKQ.H..KIQM.K.TIKM..KR | |
Retrocopy | RNKYMDLHRNPMDNNSDCYQQK-EKEGEVKRLMSIQRRQ*PGFKAKL*HKQFHVKKIQMQK<TIKMRAKR |
Parental | NTKQKNDEKTPQ-GAVPAYLLDREGQS-RAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTG |
NT.QK.DEKTPQ.GAVPAYL.DREGQS.RAKVLSN.IKQK.KEK..K.EV.L..V.A.GETEVLK...TG | |
Retrocopy | NTIQK*DEKTPQ>GAVPAYLVDREGQS<RAKVLSNIIKQKQKEKMDKGEVSLCEVQARGETEVLKIYQTG |
Parental | KREKAWKRMVTKVCF |
KR.KAWK.MVTKVCF | |
Retrocopy | KRKKAWKGMVTKVCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |