RetrogeneDB ID: | retro_tbel_152 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1317:46446..46917(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 79.62 % |
Parental protein coverage: | 59.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVP |
LDYHEKKRK.E..EAHE.SKKAKKMI.LKAKLYH.Q.H.EKIQMKK.IKMHEKR.TKQKNDEKTPQGAVP | |
Retrocopy | LDYHEKKRKMEKSEAHEHSKKAKKMIDLKAKLYHTQCHDEKIQMKKIIKMHEKRSTKQKNDEKTPQGAVP |
Parental | AYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKR-EKAWKRMVTKVCF-- |
..LLDREGQS.AKVLSNMIKQK.KEK..KWEVPL.KV.AQGE.EVLKVI..GKR.EK.WKRMVTKVCF.. | |
Retrocopy | SSLLDREGQS*AKVLSNMIKQKQKEKVEKWEVPLTKV*AQGEAEVLKVIPIGKRKEKTWKRMVTKVCFVR |
Parental | -GDFTKPPKYERFIRPM |
.G...KPPKY.RF..PM | |
Retrocopy | DGFTRKPPKYQRFTGPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |