RetrogeneDB ID: | retro_tbel_4513 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_8724:42136..42598(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000003866 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 80.52 % |
Parental protein coverage: | 60.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQNEYI.LH.KRYGY.LDYH.........E.HE.SKKAKKMIGLKAKLYHKQ..A.KI.MKKTIKMHE. | |
Retrocopy | MPQNEYI*LHHKRYGYHLDYHXXXXXXXXQEVHEHSKKAKKMIGLKAKLYHKQLQAKKI*MKKTIKMHET |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
RN.KQKNDEKT.QGAVPAY.LDREGQ..AKVLSNMIKQKRKEK.GKWEVPLPKV.AQGETE.LKVIRTGK | |
Retrocopy | RNNKQKNDEKTSQGAVPAYPLDREGQPQAKVLSNMIKQKRKEKVGKWEVPLPKVQAQGETEILKVIRTGK |
Parental | REKAWKRMVTKVCF |
R.K.WKR.VTKVCF | |
Retrocopy | RNKSWKRIVTKVCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |