Parental gene:

NSA2, ENSTBEG00000012978

Aliases:None
Description:NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_4432:360917..368085(+)


>ENSTBEG00000012978
ATGCCACAAAACGAATATATTGAATTACATCGTAAACGCTATGGATACCGTTTGGATTACCATGAGAAAAAGAGAAAGAA
GGAAAGTCGGGAGGCTCATGAACGTTCAAAGAAGGCAAAAAAGATGATTGGTCTGAAGGCTAAGCTCTATCATAAACAGC
GCCATGCTGAGAAAATACAAATGAAAAAGACTATCAAGATGCATGAAAAGAGGAACACCAAACAGAAGAATGATGAAAAG
ACTCCACAAGGAGCAGTACCTGCCTATCTGTTGGACAGAGAAGGACAGTCCCGAGCTAAAGTACTTTCCAATATGATTAA
ACAAAAACGCAAAGAGAAAGCGGGAAAATGGGAAGTCCCTCTACCCAAAGTTCGAGCCCAGGGAGAAACAGAAGTGTTAA
AAGTTATTCGAACAGGAAAGAGAGAGAAGGCATGGAAGAGGATGGTTACAAAAGTTTGCTTTGGAGATTTTACTAAACCA
CCTAAATATGAAAGATTCATTAGGCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAATATGCCCAAGTT
ACCAACAATCCTGAAAATGATGGATGTATAAATGCTGTTTTACTGGTTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000593 possible_ortholog 5 retrogenes
retro_amel_151, retro_amel_1635, retro_amel_1729, retro_amel_180, retro_amel_734,
Bos taurus ENSBTAG00000003066 possible_ortholog 3 retrogenes
retro_btau_326, retro_btau_931, retro_btau_949,
Canis familiaris ENSCAFG00000008311 possible_ortholog 4 retrogenes
retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Choloepus hoffmanni ENSCHOG00000012126 possible_ortholog 2 retrogenes
retro_chof_1702, retro_chof_1947,
Callithrix jacchus ENSCJAG00000016874 ortholog_one2many 1 retrogene
retro_cjac_116,
Cavia porcellus ENSCPOG00000006648 ortholog_one2one 1 retrogene
retro_cpor_672,
Dasypus novemcinctus ENSDNOG00000010615 ortholog_one2one 1 retrogene
retro_dnov_428,
Equus caballus ENSECAG00000005528 possible_ortholog 1 retrogene
retro_ecab_445,
Echinops telfairi ENSETEG00000004095 ortholog_one2one 13 retrogenes
retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus ENSFCAG00000011978 possible_ortholog 1 retrogene
retro_fcat_98,
Homo sapiens ENSG00000164346 ortholog_one2one 4 retrogenes
retro_hsap_1144, retro_hsap_1577, retro_hsap_4731, retro_hsap_493,
Gorilla gorilla ENSGGOG00000014365 ortholog_one2one 6 retrogenes
retro_ggor_1200, retro_ggor_2136, retro_ggor_2939, retro_ggor_463, retro_ggor_824, retro_ggor_891,
Loxodonta africana ENSLAFG00000009910 ortholog_one2one 4 retrogenes
retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii ENSMEUG00000015798 possible_ortholog 3 retrogenes
retro_meug_1191, retro_meug_1408, retro_meug_161,
Microcebus murinus ENSMICG00000000752 ortholog_one2one 3 retrogenes
retro_mmur_1074, retro_mmur_374, retro_mmur_925,
Myotis lucifugus ENSMLUG00000014464 possible_ortholog 4 retrogenes
retro_mluc_1596, retro_mluc_1664, retro_mluc_757, retro_mluc_917,
Macaca mulatta ENSMMUG00000011196 ortholog_one2one 6 retrogenes
retro_mmul_1984, retro_mmul_2219, retro_mmul_2523, retro_mmul_408, retro_mmul_441, retro_mmul_890,
Monodelphis domestica ENSMODG00000001900 ortholog_one2one 4 retrogenes
retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mustela putorius furo ENSMPUG00000005795 possible_ortholog 5 retrogenes
retro_mputfur_153, retro_mputfur_250, retro_mputfur_510, retro_mputfur_573, retro_mputfur_690,
Mus musculus ENSMUSG00000060739 possible_ortholog 25 retrogenes
retro_mmus_1121, retro_mmus_1329, retro_mmus_1472, retro_mmus_1558, retro_mmus_1587, retro_mmus_1751, retro_mmus_1785, retro_mmus_1819, retro_mmus_1890, retro_mmus_2426, retro_mmus_2617, retro_mmus_2706, retro_mmus_2806, retro_mmus_3105, retro_mmus_3246, retro_mmus_3302, retro_mmus_3340, retro_mmus_3485, retro_mmus_3671, retro_mmus_3713, retro_mmus_402, retro_mmus_518, retro_mmus_674, retro_mmus_690, retro_mmus_890,
Nomascus leucogenys ENSNLEG00000005046 ortholog_one2one 10 retrogenes
retro_nleu_1026, retro_nleu_1507, retro_nleu_1758, retro_nleu_1759, retro_nleu_1929, retro_nleu_2255, retro_nleu_2565, retro_nleu_2675, retro_nleu_768, retro_nleu_943,
Oryctolagus cuniculus ENSOCUG00000006536 ortholog_one2many 6 retrogenes
retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Ochotona princeps ENSOPRG00000001867 ortholog_one2one 7 retrogenes
retro_opri_1145, retro_opri_1195, retro_opri_254, retro_opri_427, retro_opri_654, retro_opri_778, retro_opri_83,
Pongo abelii ENSPPYG00000025926 ortholog_one2one 8 retrogenes
retro_pabe_1300, retro_pabe_1715, retro_pabe_240, retro_pabe_3434, retro_pabe_3570, retro_pabe_3678, retro_pabe_950, retro_pabe_976,
Pan troglodytes ENSPTRG00000016990 ortholog_one2one 6 retrogenes
retro_ptro_1063, retro_ptro_1713, retro_ptro_2105, retro_ptro_3146, retro_ptro_372, retro_ptro_779,
Pteropus vampyrus ENSPVAG00000005396 possible_ortholog 2 retrogenes
retro_pvam_1352, retro_pvam_476,
Rattus norvegicus ENSRNOG00000016530 possible_ortholog 15 retrogenes
retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus ENSSARG00000009424 possible_ortholog 4 retrogenes
retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sarcophilus harrisii ENSSHAG00000017654 ortholog_one2one 5 retrogenes
retro_shar_292, retro_shar_336, retro_shar_495, retro_shar_679, retro_shar_745,
Sus scrofa ENSSSCG00000014075 possible_ortholog 2 retrogenes
retro_sscr_287, retro_sscr_288,
Ictidomys tridecemlineatus ENSSTOG00000007959 ortholog_one2one 3 retrogenes
retro_itri_1630, retro_itri_1638, retro_itri_860,
Tursiops truncatus ENSTTRG00000005219 possible_ortholog 1 retrogene
retro_ttru_1468,
Vicugna pacos ENSVPAG00000007368 possible_ortholog 2 retrogenes
retro_vpac_111, retro_vpac_528,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_91 72.18 51.56
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2. retro_tbel_152 79.62 59.77
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3. retro_tbel_179 88.24 59.38
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4. retro_tbel_229 76.58 60.16
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5. retro_tbel_254 67.25 65.23
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6. retro_tbel_406 72.92 55.86
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7. retro_tbel_430 81.03 66.41
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8. retro_tbel_535 86.49 57.03
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9. retro_tbel_670 89.08 66.41
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10. retro_tbel_721 87.43 63.67
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11. retro_tbel_897 86.13 66.02
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12. retro_tbel_1062 75.86 66.41
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13. retro_tbel_1078 81.29 53.52
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14. retro_tbel_1141 79.77 66.41
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15. retro_tbel_1317 78.57 54.69
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16. retro_tbel_1329 75.31 59.77
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17. retro_tbel_1476 84.83 66.41
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18. retro_tbel_1548 82.84 63.28
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19. retro_tbel_1569 67.60 66.02
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20. retro_tbel_1627 88.64 51.56
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21. retro_tbel_1733 79.55 50.78
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22. retro_tbel_1762 72.37 56.25
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23. retro_tbel_1778 84.29 53.12
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24. retro_tbel_1845 76.60 53.52
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25. retro_tbel_1940 72.94 63.67
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26. retro_tbel_2102 85.21 64.84
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27. retro_tbel_2113 79.56 53.52
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28. retro_tbel_2138 77.63 58.20
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29. retro_tbel_2220 79.14 61.72
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30. retro_tbel_2586 86.62 54.69
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31. retro_tbel_2757 72.92 55.86
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32. retro_tbel_2784 69.92 51.56
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33. retro_tbel_3016 78.86 66.41
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34. retro_tbel_3040 80.12 60.94
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35. retro_tbel_3116 78.68 52.34
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36. retro_tbel_3264 66.90 55.08
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37. retro_tbel_3298 78.29 66.41
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38. retro_tbel_3417 88.41 53.91
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39. retro_tbel_3514 77.40 66.41
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40. retro_tbel_3601 65.34 66.41
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41. retro_tbel_3650 81.50 65.62
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42. retro_tbel_3724 91.38 66.41
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43. retro_tbel_3736 73.53 51.56
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44. retro_tbel_3763 61.19 50.39
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45. retro_tbel_3795 86.05 66.41
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46. retro_tbel_4028 61.29 59.38
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47. retro_tbel_4104 68.21 66.41
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48. retro_tbel_4169 79.77 66.41
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49. retro_tbel_4270 85.51 53.52
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50. retro_tbel_4401 73.94 53.52
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51. retro_tbel_4422 84.67 56.64
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52. retro_tbel_4491 86.86 66.41
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53. retro_tbel_4503 85.26 60.55
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54. retro_tbel_4513 80.52 60.16
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55. retro_tbel_4642 75.43 66.02
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56. retro_tbel_4689 83.33 56.25
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Download FASTA sequences of all ENSTBEG00000012978 retrocopies