RetrogeneDB ID: | retro_tbel_3601 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_145936:17738..18258(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 65.34 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKES-REAHERSKKAKKMIGLKAKLYHKQ-RHAEKIQMKKTIKMH |
MPQNEY..L..K.Y.Y.LDYH.KKRK.ES..EAHE.S.KAKKM.GLKAKLY.KQ.....K.Q.K...... | |
Retrocopy | MPQNEYTDLYHKHYQYCLDYHKKKRKEESLEEAHEHSNKAKKMTGLKAKLYYKQ<TMLRKFQ*KRLSRCM |
Parental | EKRNTKQK-NDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIR |
.........NDEKT.QGAVP.YLLDR.GQS.AKVLSNMIKQK.KEK.GKWEVPLPKV.AQGE.EV.KV.R | |
Retrocopy | KRATPNER<NDEKTTQGAVPVYLLDRKGQS*AKVLSNMIKQK*KEKSGKWEVPLPKVQAQGEIEVFKVTR |
Parental | TGKREKAWKRMVTKVCF---GDFTKPPKYERFIRPM |
TGKR.KAW.RMVTKVC....G...K..K.ERFI.P. | |
Retrocopy | TGKRKKAWRRMVTKVCLVGNGFIRKHLKHERFIGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |