RetrogeneDB ID: | retro_btau_266 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:83846163..83846616(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSBTAG00000040308 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX8] |
Percent Identity: | 97.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MGRMHAPGKGLSQSAL.YRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK | |
Retrocopy | MGRMHAPGKGLSQSALTYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
ILRILKSKGLAPDLPEDLYHLIKKAVA.RKHLERNRKDKDAKF.LILIESRIHRLARYYKTK.VLPPNWK | |
Retrocopy | ILRILKSKGLAPDLPEDLYHLIKKAVALRKHLERNRKDKDAKFHLILIESRIHRLARYYKTK*VLPPNWK |
Parental | YESSTASALVA |
YESSTASALVA | |
Retrocopy | YESSTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 93 .87 RPM |
ERP005899_muscle | 0 .26 RPM | 575 .35 RPM |
SRP017611_brain | 0 .00 RPM | 33 .21 RPM |
SRP017611_kidney | 0 .18 RPM | 99 .40 RPM |
SRP017611_liver | 0 .15 RPM | 82 .00 RPM |
SRP030211_testis | 0 .02 RPM | 36 .04 RPM |