Parental gene:

RPS13, ENSCPOG00000000023

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_67:7300512..7303162(-)


>ENSCPOG00000000023
ATGGGTCGCATGCATGCTCCCGGGAAGGGCCTGTCCCAGTCGGCTCTGCCGTATCGTCGCAGTGTCCCCACCTGGCTGAA
GCTGTCTGACGACGTGAAGAGACAGATTTACAATTGGCCAAGAAGGGGCCTGACTTCCCTCACAGATCGTGTGATCCTGA
GAGACTCTCATGGTGTTGCACAAGTACGTTTTGTGACAGGTAATAAAATCTTGAGAATCCTTAAGTCTAAAGGACTTGCT
CCAGATCTCCCTGAAGATCTCTACCACTTAATTAAGAAAGCAGTTGCTGTTCGAAAACATCTTGAGAGGAACAGAAAGGA
TAAGGATGCCAAATTCCGCCTGATTCTCATCGAGAGCCGGATTCACAGATTGGCTCGATATTATAAAACCAAACGGGTCC
TCCCCCCAAACTGGAAATATGAGTCATCCACAGCCTCTGCCCTGGTGGCATAA

Library Parental gene expression (RPM)
SRP017611_liver 58 .20 RPM
SRP017611_kidney 87 .83 RPM
SRP017611_brain 54 .01 RPM
SRP040447_lung 100 .51 RPM
SRP040447_skeletal_muscle 126 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Caenorhabditis elegans C16A3.9 ortholog_one2one 1 retrogene
retro_cele_6,
Ailuropoda melanoleuca ENSAMEG00000002895 ortholog_one2one 3 retrogenes
retro_amel_1451, retro_amel_1788, retro_amel_694,
Bos taurus ENSBTAG00000040308 ortholog_one2many 5 retrogenes
retro_btau_1286, retro_btau_266, retro_btau_284, retro_btau_46, retro_btau_784,
Choloepus hoffmanni ENSCHOG00000008721 ortholog_one2one 4 retrogenes
retro_chof_1484, retro_chof_1497, retro_chof_1644, retro_chof_2359,
Callithrix jacchus ENSCJAG00000009564 ortholog_one2many 1 retrogene
retro_cjac_356,
Dipodomys ordii ENSDORG00000002507 ortholog_one2one 3 retrogenes
retro_dord_397, retro_dord_57, retro_dord_759,
Equus caballus ENSECAG00000014928 ortholog_one2one 12 retrogenes
retro_ecab_1037, retro_ecab_1047, retro_ecab_1065, retro_ecab_1066, retro_ecab_170, retro_ecab_304, retro_ecab_696, retro_ecab_777, retro_ecab_804, retro_ecab_822, retro_ecab_891, retro_ecab_954,
Felis catus ENSFCAG00000005370 ortholog_one2many 2 retrogenes
retro_fcat_407, retro_fcat_598,
Homo sapiens ENSG00000110700 ortholog_one2one 6 retrogenes
retro_hsap_1499, retro_hsap_1574, retro_hsap_2098, retro_hsap_251, retro_hsap_3242, retro_hsap_388,
Gorilla gorilla ENSGGOG00000007450 ortholog_one2many 3 retrogenes
retro_ggor_127, retro_ggor_2207, retro_ggor_303,
Latimeria chalumnae ENSLACG00000017174 ortholog_one2many 1 retrogene
retro_lcha_2,
Loxodonta africana ENSLAFG00000026881 ortholog_one2one 3 retrogenes
retro_lafr_1179, retro_lafr_382, retro_lafr_511,
Macropus eugenii ENSMEUG00000014986 ortholog_one2one 2 retrogenes
retro_meug_635, retro_meug_797,
Microcebus murinus ENSMICG00000003716 ortholog_one2one 8 retrogenes
retro_mmur_1109, retro_mmur_1620, retro_mmur_172, retro_mmur_460, retro_mmur_588, retro_mmur_85, retro_mmur_880, retro_mmur_904,
Myotis lucifugus ENSMLUG00000009751 ortholog_one2many 3 retrogenes
retro_mluc_174, retro_mluc_2470, retro_mluc_899,
Macaca mulatta ENSMMUG00000022547 ortholog_one2many 2 retrogenes
retro_mmul_330, retro_mmul_40,
Monodelphis domestica ENSMODG00000007078 ortholog_one2one 6 retrogenes
retro_mdom_1108, retro_mdom_1150, retro_mdom_1895, retro_mdom_1965, retro_mdom_566, retro_mdom_599,
Mustela putorius furo ENSMPUG00000013316 ortholog_one2many 1 retrogene
retro_mputfur_181,
Mus musculus ENSMUSG00000090862 ortholog_one2one 19 retrogenes
retro_mmus_1062, retro_mmus_1124, retro_mmus_1526, retro_mmus_1563, retro_mmus_1980, retro_mmus_2210, retro_mmus_2642, retro_mmus_2830, retro_mmus_2831, retro_mmus_2832, retro_mmus_2906, retro_mmus_3050, retro_mmus_3092, retro_mmus_3153, retro_mmus_3236, retro_mmus_328, retro_mmus_3423, retro_mmus_775, retro_mmus_807,
Nomascus leucogenys ENSNLEG00000026739 ortholog_one2one 4 retrogenes
retro_nleu_1304, retro_nleu_1693, retro_nleu_2439, retro_nleu_858,
Ornithorhynchus anatinus ENSOANG00000007687 ortholog_one2one 1 retrogene
retro_oana_98,
Oryctolagus cuniculus ENSOCUG00000005536 ortholog_one2one 6 retrogenes
retro_ocun_1337, retro_ocun_1523, retro_ocun_1929, retro_ocun_673, retro_ocun_740, retro_ocun_909,
Otolemur garnettii ENSOGAG00000002128 ortholog_one2one 7 retrogenes
retro_ogar_1567, retro_ogar_1595, retro_ogar_1818, retro_ogar_2751, retro_ogar_3441, retro_ogar_502, retro_ogar_844,
Ochotona princeps ENSOPRG00000000162 ortholog_one2one 5 retrogenes
retro_opri_1107, retro_opri_239, retro_opri_390, retro_opri_487, retro_opri_57,
Pongo abelii ENSPPYG00000003456 ortholog_one2one 6 retrogenes
retro_pabe_1250, retro_pabe_1298, retro_pabe_2001, retro_pabe_2012, retro_pabe_2689, retro_pabe_408,
Pteropus vampyrus ENSPVAG00000012806 ortholog_one2one 3 retrogenes
retro_pvam_1143, retro_pvam_698, retro_pvam_880,
Rattus norvegicus ENSRNOG00000020502 ortholog_one2many 2 retrogenes
retro_rnor_190, retro_rnor_377,
Sarcophilus harrisii ENSSHAG00000004052 ortholog_one2one 3 retrogenes
retro_shar_183, retro_shar_298, retro_shar_589,
Sus scrofa ENSSSCG00000013381 ortholog_one2many 5 retrogenes
retro_sscr_1209, retro_sscr_264, retro_sscr_333, retro_sscr_711, retro_sscr_738,
Ictidomys tridecemlineatus ENSSTOG00000008996 ortholog_one2one 5 retrogenes
retro_itri_1011, retro_itri_1905, retro_itri_329, retro_itri_493, retro_itri_881,
Tupaia belangeri ENSTBEG00000007717 ortholog_one2one 7 retrogenes
retro_tbel_1777, retro_tbel_2022, retro_tbel_3850, retro_tbel_3913, retro_tbel_4204, retro_tbel_661, retro_tbel_902,
Tarsius syrichta ENSTSYG00000013114 ortholog_one2one 11 retrogenes
retro_tsyr_133, retro_tsyr_1352, retro_tsyr_1447, retro_tsyr_1460, retro_tsyr_1712, retro_tsyr_1900, retro_tsyr_1967, retro_tsyr_247, retro_tsyr_51, retro_tsyr_887, retro_tsyr_904,
Tursiops truncatus ENSTTRG00000016321 ortholog_one2one 3 retrogenes
retro_ttru_1168, retro_ttru_1435, retro_ttru_737,
Vicugna pacos ENSVPAG00000001463 ortholog_one2one 5 retrogenes
retro_vpac_117, retro_vpac_247, retro_vpac_415, retro_vpac_473, retro_vpac_525,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_400 63.55 71.33
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2. retro_cpor_526 67.35 64.00
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3. retro_cpor_1535 74.34 100.00
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Download FASTA sequences of all ENSCPOG00000000023 retrocopies