RetrogeneDB ID: | retro_shar_298 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841256.1:412628..412996(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSHAG00000004052 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 58.02 % |
Parental protein coverage: | 83.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QSALPYRRSVPTRRAQWLKLTSDDVKEQIYKLAKKGPQASQIGVILR-DSHGVAQVRFVTGNKILRILKS |
Q..LPY..S.......WLKLT....K.QI.KLA.KG...SQ....LR.DSHG.AQ.....GN..LRI.KS | |
Retrocopy | QHCLPYCHSI----LMWLKLTYNNMKRQIHKLA*KGLTFSQSDTVLR<DSHGMAQLCSEIGNRMLRIPKS |
Parental | KGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILNESRIHRLARYYKTKRVLPPN |
K.LA.D....L...IKK.VAV.KHL.RNRKDKDSKF.LI..ESRIH.LA..YKTKR.LP.N | |
Retrocopy | KRLASDKSLSL---IKKPVAVQKHLKRNRKDKDSKFCLIVKESRIHWLAQ*YKTKRTLPHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |