RetrogeneDB ID: | retro_ggor_303 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:144829135..144829503(+) | ||
Located in intron of: | ENSGGOG00000000900 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000007450 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.26 % |
Parental protein coverage: | 81.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKG-LAPDLPEDLYHLIKKAVA |
TSDD.KEQI.KLAKKGLTPSQIG.ILRDSH..AQ.RFVTGNKILRILKSKG..AP.LPEDLYHLIK.AV. | |
Retrocopy | TSDDMKEQI*KLAKKGLTPSQIGGILRDSHDAAQARFVTGNKILRILKSKG<TAPNLPEDLYHLIKAAVT |
Parental | VRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA |
V...L.R.RKDK.AKF.LILIESRIH.LARYYKTK.VL.PNWKYES.TASALVA | |
Retrocopy | VQRLLDRKRKDKNAKFCLILIESRIHCLARYYKTK*VLSPNWKYESYTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 38 .94 RPM |
SRP007412_cerebellum | 0 .12 RPM | 62 .45 RPM |
SRP007412_heart | 0 .00 RPM | 30 .08 RPM |
SRP007412_kidney | 0 .12 RPM | 150 .39 RPM |
SRP007412_liver | 0 .08 RPM | 148 .90 RPM |
SRP007412_testis | 0 .00 RPM | 111 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_251 |
Pongo abelii | retro_pabe_408 |