RetrogeneDB ID: | retro_itri_329 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:6182062..6182506(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSTOG00000008996 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 57.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MGRMHAPGKG-LSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKG-LTPSQIGVILRDSHGVAQVRFVTG |
....HAPGKG.LS...L....SVP.WLKLTSDD.KEQIY...KKG.L.PSQ..VI..DS.G.A......G | |
Retrocopy | LSHAHAPGKG>LS*LSLISHGSVPSWLKLTSDDMKEQIYEQGKKG<LSPSQSSVIWKDSQGIA*M*LGMG |
Parental | NKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPN |
.K.LR..KS.G.A...PEDL....K.AVA..KHLERNRKDKD....L.LIESRIH.L......K.VLP.. | |
Retrocopy | HKSLRFPKSRGHA---PEDLHLPSKRAVAS*KHLERNRKDKDTNVCLVLIESRIHQLTPQDEAK*VLPLS |
Parental | WKYESSTASALVA |
W..ESST.SALVA | |
Retrocopy | WELESSTTSALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |