RetrogeneDB ID: | retro_vpac_415 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_16892:6095..6307(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSVPAG00000001463 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 76.39 % |
Parental protein coverage: | 71. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | APDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPP-NWKYESSTASAL |
.P...E.LYHLIKKA.AV.KHL.R.RKDKDAKF.LILIES.I..LARY.KTK.VLP..NWKYESSTASAL | |
Retrocopy | SPGSTEKLYHLIKKAIAVQKHL*RDRKDKDAKFCLILIESHIQWLARYCKTKQVLPT<NWKYESSTASAL |
Parental | VA |
VA | |
Retrocopy | VA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |