RetrogeneDB ID: | retro_mmus_2832 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:68297001..68297313(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 69.54 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | LSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL |
L.Q..L.Y..S...WLK.TS..VK.QI..LAKK..T..QIGVIL.DS.GV.Q...VT.NKILRILK.K.L | |
Retrocopy | LYQ*VL*Y*LSITNWLKFTSE*VKKQIHNLAKKDKTTFQIGVILKDSCGVVQTCCVTCNKILRILKAKIL |
Parental | APDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRL |
.PD.PED.YH.IKK.V.V...L....K.K.AK..L | |
Retrocopy | NPDCPEDHYHMIKKNVSVH-NLRGTMKAKNAKYCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |