RetrogeneDB ID: | retro_rnor_190 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:62180027..62180495(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048698 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSRNOG00000020502 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:P62278] |
Percent Identity: | 95.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIY----KLAKKGLTPSQIGVILRDSHGVAQVRFV |
MG.MHAP.KGLSQSALPYRRSVPTWLKLTSDDVKEQIY....KLAKKGLTPSQIGVILRDSHGVAQVRFV | |
Retrocopy | MGHMHAPSKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKLAKKGLTPSQIGVILRDSHGVAQVRFV |
Parental | TGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLP |
T.NKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLP | |
Retrocopy | TRNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLP |
Parental | PNWKYESSTASALVA |
PNWKYESSTASALVA | |
Retrocopy | PNWKYESSTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .76 RPM |
SRP017611_liver | 0 .07 RPM | 45 .86 RPM |