Parental gene:

rps13 (1 of 3), ENSLACG00000017174

Aliases:None
Description:ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126627.1:1946677..1955467(+)


>ENSLACG00000017174
ATGGGTCGTATGCACGCTCCGGGAAAGGGCTTGTCCCAATCAGCTCTGCCTTACAGACGTAGTGTGCCCACATGGCTGAA
ACTTACGTCTGATGATGTGAAGGAACAGATCTTTAAACTGGCCAAGAAAGGTCTGACACCTTCACAGATTGGTGTTATCC
TGAGGGACTCCCATGGTGTTGCCCAAGTGCGTTTTGTTACTGGCAACAAAATCCTGAGAATCCTTAAGTCTAAGGGTTTG
GCTCCAGATCTTCCAGAGGATCTGTATCATCTCATCAAGAAGGCTGTTGCTGTCCGCAAACACCTTGAGAGGAACAGAAA
GGATAAGGATGCCAAGTTCCGTCTCATTTTGATTGAAAGCAGAATCCACAGGCTGGCTCGTTATTACAAGACCAAGAGAG
TACTTCCTCCCAATTGGAAATATGAATCATCCACAGCTTCAGCTCTTGTTGCCTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 475 .90 RPM
DRP000627_kidney 376 .34 RPM
DRP000627_pelvic_fin 529 .74 RPM
DRP000627_pharynx 261 .19 RPM
DRP000627_gill 358 .99 RPM
DRP000627_tail_muscle 166 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Caenorhabditis elegans C16A3.9 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000002895 ortholog_one2many 3 retrogenes
Bos taurus ENSBTAG00000040308 ortholog_many2many 5 retrogenes
Choloepus hoffmanni ENSCHOG00000008721 ortholog_one2many 4 retrogenes
Callithrix jacchus ENSCJAG00000009564 ortholog_many2many 1 retrogene
Cavia porcellus ENSCPOG00000000023 ortholog_one2many 3 retrogenes
Dipodomys ordii ENSDORG00000002507 ortholog_one2many 3 retrogenes
Equus caballus ENSECAG00000014928 ortholog_one2many 12 retrogenes
Felis catus ENSFCAG00000005370 ortholog_many2many 2 retrogenes
Homo sapiens ENSG00000110700 ortholog_one2many 6 retrogenes
Gorilla gorilla ENSGGOG00000007450 ortholog_many2many 3 retrogenes
Loxodonta africana ENSLAFG00000026881 ortholog_one2many 3 retrogenes
Macropus eugenii ENSMEUG00000014986 ortholog_one2many 2 retrogenes
Microcebus murinus ENSMICG00000003716 ortholog_one2many 8 retrogenes
Myotis lucifugus ENSMLUG00000009751 ortholog_many2many 3 retrogenes
Macaca mulatta ENSMMUG00000022547 ortholog_many2many 2 retrogenes
Monodelphis domestica ENSMODG00000007078 ortholog_one2many 6 retrogenes
Mustela putorius furo ENSMPUG00000013316 ortholog_many2many 1 retrogene
Mus musculus ENSMUSG00000090862 ortholog_one2many 19 retrogenes
Nomascus leucogenys ENSNLEG00000026739 ortholog_one2many 4 retrogenes
Ornithorhynchus anatinus ENSOANG00000007687 ortholog_one2many 1 retrogene
Oryctolagus cuniculus ENSOCUG00000005536 ortholog_one2many 6 retrogenes
Otolemur garnettii ENSOGAG00000002128 ortholog_one2many 7 retrogenes
Ochotona princeps ENSOPRG00000000162 ortholog_one2many 5 retrogenes
Pongo abelii ENSPPYG00000003456 ortholog_one2many 6 retrogenes
Pteropus vampyrus ENSPVAG00000012806 ortholog_one2many 3 retrogenes
Rattus norvegicus ENSRNOG00000020502 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000004052 ortholog_one2many 3 retrogenes
Sus scrofa ENSSSCG00000013381 ortholog_many2many 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000008996 ortholog_one2many 5 retrogenes
Tupaia belangeri ENSTBEG00000007717 ortholog_one2many 7 retrogenes
Tarsius syrichta ENSTSYG00000013114 ortholog_one2many 11 retrogenes
Tursiops truncatus ENSTTRG00000016321 ortholog_one2many 3 retrogenes
Vicugna pacos ENSVPAG00000001463 ortholog_one2many 5 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_2 100.00 100.00
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Download FASTA sequences of all ENSLACG00000017174 retrocopies