RetrogeneDB ID: | retro_pabe_2001 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:68989471..68989918(-) | ||
Located in intron of: | ENSPPYG00000012462 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSPPYG00000003456 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 81.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKK-GLTPSQIGVILR-DSHGVAQVRFVTG |
MGRMHAP.KGLS..ALPY..S..TWLKLTSD..K..IYKLA.K.GLTPSQIG...R...HGVAQVRFVTG | |
Retrocopy | MGRMHAPRKGLSRLALPYHCSITTWLKLTSDEMKK-IYKLANK<GLTPSQIG-VIR>ETHGVAQVRFVTG |
Parental | NKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPN |
NKILRILKSKGL.PDLPEDLYHLIKKAVAV.KHLERNRKD.DAKF.LILIES.IH.L..YYKTK.VLPPN | |
Retrocopy | NKILRILKSKGLVPDLPEDLYHLIKKAVAVQKHLERNRKDEDAKFCLILIESWIHHLV*YYKTK*VLPPN |
Parental | WKYESSTASALVA |
WKYESSTAS.LVA | |
Retrocopy | WKYESSTASVLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 55 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .62 RPM |
SRP007412_heart | 0 .00 RPM | 114 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 124 .83 RPM |
SRP007412_liver | 0 .00 RPM | 128 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2098 |