RetrogeneDB ID: | retro_ocun_909 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:39436332..39436645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSOCUG00000005536 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 64.81 % |
Parental protein coverage: | 70.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR-FVTGN |
MG.M.A..KGLSQ.ALPY....PTWL.L.S.DVKE.IYKLA...LTP.Q.GVI.RDS.G.AQVR.F..G. | |
Retrocopy | MGHMLALTKGLSQWALPYCHCIPTWLDLASSDVKE-IYKLATEHLTPLQVGVIPRDSCGIAQVR<FYAGR |
Parental | KILRILKSKGLAPDLPE-DLYHLIKKAVAVRKHLERNR |
.I...LKS.GLAPDLPE.DL.HL..KAVAV.KHLE... | |
Retrocopy | TISGLLKSRGLAPDLPE<DLSHLV*KAVAVQKHLEKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 201 .19 RPM |
SRP017611_liver | 0 .00 RPM | 68 .13 RPM |