RetrogeneDB ID: | retro_oana_98 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig92979:468..921(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSOANG00000007687 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 70.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MGRM...GKG.S.S..PYRR..P.WLKL....V.EQI.KLAKKG.TPSQIGV.LRDS..V.QV...T.NK | |
Retrocopy | MGRMYGKGKGISSSSTPYRRKPPAWLKLKAYEVEEQIAKLAKKGQTPSQIGVVLRDSMAVPQVKAITNNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILNESRIHRLARYYKTKRVLPPNWK |
ILRILK..GLAP..PEDLY.LIKKAVA.RKH.ERN..DKD.KFRLIL.ESRIHRLARYYK.KR.LP..WK | |
Retrocopy | ILRILKAQGLAPEIPEDLYFLIKKAVAMRKHMERNLNDKDSKFRLILVESRIHRLARYYKKKRQLPATWK |
Parental | YESSTASALVA |
Y.S.TAS.L.A | |
Retrocopy | YQSATASTLLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 197 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 255 .05 RPM |
SRP007412_heart | 0 .00 RPM | 652 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 194 .83 RPM |
SRP007412_liver | 0 .00 RPM | 118 .88 RPM |
SRP007412_testis | 0 .00 RPM | 172 .09 RPM |