RetrogeneDB ID: | retro_mmus_3050 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:88530445..88530898(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000069972 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK | |
Retrocopy | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK | |
Retrocopy | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
Parental | YESSTASALVA |
YESSTASALVA | |
Retrocopy | YESSTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .65 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .17 RPM | 19 .84 RPM |
SRP007412_heart | 0 .22 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .15 RPM | 34 .61 RPM |
SRP007412_liver | 0 .22 RPM | 31 .90 RPM |
SRP007412_testis | 0 .46 RPM | 43 .50 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_137903 | 646 libraries | 370 libraries | 55 libraries | 1 library | 0 libraries |