RetrogeneDB ID: | retro_pabe_2012 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:88330844..88331125(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSPPYG00000003456 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 77.08 % |
Parental protein coverage: | 62.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES-RIHRL |
S.G.AQV.FVTGN.ILR.LKSK.LAPDLPEDLY.LIK.AVA..KHLERNRKDKDAKF.LILI...R..R. | |
Retrocopy | SYGAAQVCFVTGNTILRNLKSKRLAPDLPEDLYCLIKQAVAI*KHLERNRKDKDAKFHLILIDT<RLARY |
Parental | ARYYKTKRVLPPNWKYESSTASALVA |
..Y.KTK..LPPNWKYESSTASALVA | |
Retrocopy | Y*Y-KTKQILPPNWKYESSTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 55 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .62 RPM |
SRP007412_heart | 0 .00 RPM | 114 .36 RPM |
SRP007412_kidney | 0 .03 RPM | 124 .83 RPM |
SRP007412_liver | 0 .00 RPM | 128 .71 RPM |