RetrogeneDB ID: | retro_mmus_1124 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:78286636..78287084(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 79.47 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGRMHA-PGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGN |
MG.MHA.PG...SQS..PY..SVPTWLKLTSD.VKEQIYK.A.KGLTPSQIGVILRDSHGVAQV.FVTG. | |
Retrocopy | MGCMHA>PGS-VSQSVQPYCCSVPTWLKLTSDEVKEQIYKFANKGLTPSQIGVILRDSHGVAQVHFVTGI |
Parental | KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW |
KILRIL.SKGLAPDLP.DLY.LIKKA.AV.KHLER.RKDK.A.F.L.L..SRIH.LA.YYKTK.VLPPNW | |
Retrocopy | KILRIL*SKGLAPDLPGDLYRLIKKAAAV*KHLERKRKDKYAEFLLTLVGSRIHPLA*YYKTKQVLPPNW |
Parental | KYESSTASALV |
KYES.TASA.V | |
Retrocopy | KYESPTASAPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .04 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |