RetrogeneDB ID: | retro_itri_881 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393338.1:444473..444831(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSTOG00000008996 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 88.33 % |
Parental protein coverage: | 78.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGRMHA-PGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGN |
MG.MHA.P.KGLSQSALP...SVPTWLKLT.DDVK.QIY.LAKKGLTPSQIGVILRDSHGVAQVRFVTGN | |
Retrocopy | MGHMHA>PRKGLSQSALPDLCSVPTWLKLTFDDVKDQIYRLAKKGLTPSQIGVILRDSHGVAQVRFVTGN |
Parental | KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE |
KILRILKSKG.APDLPEDLYHLIK.AVA..KHLERNRKDKDAKF.LILIE | |
Retrocopy | KILRILKSKGPAPDLPEDLYHLIKNAVAIQKHLERNRKDKDAKFCLILIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |