RetrogeneDB ID: | retro_sscr_711 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:104040074..104040524(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSSCG00000013381 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:P62279] |
Percent Identity: | 81.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTKQWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTG |
MG..HA.GKGLSQ.ALPYRRS.P......L.SD.VKEQIYKLAKKGLTPS.I..ILRDS.GVAQVRFVTG | |
Retrocopy | MGCIHAFGKGLSQWALPYRRSPPPS*--NLPSDEVKEQIYKLAKKGLTPSNISEILRDSRGVAQVRFVTG |
Parental | NKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPN |
NKILRILKSK...P.L.EDLYHLIKKAVAV.KHLERNRKDKDAKF.LIL.ESRIHRLARYYKTK.VLPP. | |
Retrocopy | NKILRILKSKEPVPHL-EDLYHLIKKAVAV*KHLERNRKDKDAKFYLILTESRIHRLARYYKTK*VLPPS |
Parental | WKYESSTASALVA |
WKYES.TAS.LVA | |
Retrocopy | WKYESPTASFLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 387 .97 RPM |
SRP014902_testis | 0 .00 RPM | 276 .95 RPM |
SRP018288_heart | 0 .00 RPM | 294 .10 RPM |
SRP018288_kidney | 0 .00 RPM | 246 .76 RPM |
SRP018288_liver | 0 .00 RPM | 239 .22 RPM |
SRP018288_lung | 0 .00 RPM | 108 .85 RPM |
SRP018856_adipose | 0 .00 RPM | 271 .12 RPM |
SRP035408_brain | 0 .00 RPM | 90 .96 RPM |
SRP035408_liver | 0 .00 RPM | 76 .62 RPM |