RetrogeneDB ID: | retro_mmus_1062 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:112937583..112937924(+) | ||
Located in intron of: | ENSMUSG00000042426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 80.99 % |
Parental protein coverage: | 77.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILR-DSHGVAQVRFVTGN |
MGRMHAP.KGLSQS.LPYR.SVP.WLKLTSDD.K.QIYKLAKKGLTPSQIGVILR.DS..VAQ..FVTGN | |
Retrocopy | MGRMHAPRKGLSQSLLPYRHSVPMWLKLTSDDLKDQIYKLAKKGLTPSQIGVILR<DSRAVAQACFVTGN |
Parental | KILRILKSKGLA-PDLPEDLYHLIKKAVAVRKHLERN-RK-DKDAKFRLIL |
KILRILKSK.LA.PDLP.DL.HL.....AVRKHLERN.RK.DK.AKFRLIL | |
Retrocopy | KILRILKSKHLA<PDLPGDLSHLV----AVRKHLERNERK>DKGAKFRLIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .04 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_26747 | 365 libraries | 424 libraries | 271 libraries | 10 libraries | 2 libraries |