RetrogeneDB - Parental gene ENSECAG00000014928 details

							
>ENSECAG00000014928
ATGGGTCGCATGCATGCTCCCGGGAAGGGCCTGTCCCAGTCGGCGCTGCCCTACCGCCGCAGCGTGCCCACTTGGCTGAA

GTTGACGTCTGACGACGTGAAGGAGCAGATCTACAAGCTGGCCAAGAAGGGCCTGACGCCGTCGCAGATCGGTGTGATCC

TGAGAGACTCACATGGCGTTGCACAAGTGCGTTTTGTGACAGGCAATAAAATCTTGAGAATTCTTAAGTCCAAAGGACTT

GCTCCTGATCTCCCTGAGGACCTCTACCATTTAATTAAGAAAGCTGTTGCTGTTCGAAAGCATCTGGAGAGGAACAGAAA

GGATAAGGATGCTAAATTCCGTCTGATTCTGATCGAGAGTCGTATTCACCGGTTGGCTCGATATTATAAGACTAAACGAG

TCCTTCCCCCGAATTGGAAATATGAGTCATCCACAGCCTCTGCCTTGGTTGCATAA

Library	Parental gene expression (RPM)
SRP021940_synovial_membrane	341 .42 RPM
SRP021940_embryo	354 .97 RPM
SRP021940_cerebellum	255 .77 RPM
SRP021940_testis	157 .43 RPM
SRP021940_placental_villous	260 .67 RPM
SRP021940_articular_cartilage	562 .67 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Caenorhabditis elegans	C16A3.9	ortholog_one2one	1 retrogene	retro_cele_6,
Ailuropoda melanoleuca	ENSAMEG00000002895	ortholog_one2one	3 retrogenes	retro_amel_1451, retro_amel_1788, retro_amel_694,
Bos taurus	ENSBTAG00000040308	ortholog_one2many	5 retrogenes	retro_btau_1286, retro_btau_266, retro_btau_284, retro_btau_46, retro_btau_784,
Choloepus hoffmanni	ENSCHOG00000008721	ortholog_one2one	4 retrogenes	retro_chof_1484, retro_chof_1497, retro_chof_1644, retro_chof_2359,
Callithrix jacchus	ENSCJAG00000009564	ortholog_one2many	1 retrogene	retro_cjac_356,
Cavia porcellus	ENSCPOG00000000023	ortholog_one2one	3 retrogenes	retro_cpor_1535, retro_cpor_400, retro_cpor_526,
Dipodomys ordii	ENSDORG00000002507	ortholog_one2one	3 retrogenes	retro_dord_397, retro_dord_57, retro_dord_759,
Felis catus	ENSFCAG00000005370	ortholog_one2many	2 retrogenes	retro_fcat_407, retro_fcat_598,
Homo sapiens	ENSG00000110700	ortholog_one2one	6 retrogenes	retro_hsap_1499, retro_hsap_1574, retro_hsap_2098, retro_hsap_251, retro_hsap_3242, retro_hsap_388,
Gorilla gorilla	ENSGGOG00000007450	ortholog_one2many	3 retrogenes	retro_ggor_127, retro_ggor_2207, retro_ggor_303,
Latimeria chalumnae	ENSLACG00000017174	ortholog_one2many	1 retrogene	retro_lcha_2,
Loxodonta africana	ENSLAFG00000026881	ortholog_one2one	3 retrogenes	retro_lafr_1179, retro_lafr_382, retro_lafr_511,
Macropus eugenii	ENSMEUG00000014986	ortholog_one2one	2 retrogenes	retro_meug_635, retro_meug_797,
Microcebus murinus	ENSMICG00000003716	ortholog_one2one	8 retrogenes	retro_mmur_1109, retro_mmur_1620, retro_mmur_172, retro_mmur_460, retro_mmur_588, retro_mmur_85, retro_mmur_880, retro_mmur_904,
Myotis lucifugus	ENSMLUG00000009751	ortholog_one2many	3 retrogenes	retro_mluc_174, retro_mluc_2470, retro_mluc_899,
Macaca mulatta	ENSMMUG00000022547	ortholog_one2many	2 retrogenes	retro_mmul_330, retro_mmul_40,
Monodelphis domestica	ENSMODG00000007078	ortholog_one2one	6 retrogenes	retro_mdom_1108, retro_mdom_1150, retro_mdom_1895, retro_mdom_1965, retro_mdom_566, retro_mdom_599,
Mustela putorius furo	ENSMPUG00000013316	ortholog_one2many	1 retrogene	retro_mputfur_181,
Mus musculus	ENSMUSG00000090862	ortholog_one2one	19 retrogenes	retro_mmus_1062, retro_mmus_1124, retro_mmus_1526, retro_mmus_1563, retro_mmus_1980, retro_mmus_2210, retro_mmus_2642, retro_mmus_2830, retro_mmus_2831, retro_mmus_2832, retro_mmus_2906, retro_mmus_3050, retro_mmus_3092, retro_mmus_3153, retro_mmus_3236, retro_mmus_328, retro_mmus_3423, retro_mmus_775, retro_mmus_807,
Nomascus leucogenys	ENSNLEG00000026739	ortholog_one2one	4 retrogenes	retro_nleu_1304, retro_nleu_1693, retro_nleu_2439, retro_nleu_858,
Ornithorhynchus anatinus	ENSOANG00000007687	ortholog_one2one	1 retrogene	retro_oana_98,
Oryctolagus cuniculus	ENSOCUG00000005536	ortholog_one2one	6 retrogenes	retro_ocun_1337, retro_ocun_1523, retro_ocun_1929, retro_ocun_673, retro_ocun_740, retro_ocun_909,
Otolemur garnettii	ENSOGAG00000002128	ortholog_one2one	7 retrogenes	retro_ogar_1567, retro_ogar_1595, retro_ogar_1818, retro_ogar_2751, retro_ogar_3441, retro_ogar_502, retro_ogar_844,
Ochotona princeps	ENSOPRG00000000162	ortholog_one2one	5 retrogenes	retro_opri_1107, retro_opri_239, retro_opri_390, retro_opri_487, retro_opri_57,
Pongo abelii	ENSPPYG00000003456	ortholog_one2one	6 retrogenes	retro_pabe_1250, retro_pabe_1298, retro_pabe_2001, retro_pabe_2012, retro_pabe_2689, retro_pabe_408,
Pteropus vampyrus	ENSPVAG00000012806	ortholog_one2one	3 retrogenes	retro_pvam_1143, retro_pvam_698, retro_pvam_880,
Rattus norvegicus	ENSRNOG00000020502	ortholog_one2many	2 retrogenes	retro_rnor_190, retro_rnor_377,
Sarcophilus harrisii	ENSSHAG00000004052	ortholog_one2one	3 retrogenes	retro_shar_183, retro_shar_298, retro_shar_589,
Sus scrofa	ENSSSCG00000013381	ortholog_one2many	5 retrogenes	retro_sscr_1209, retro_sscr_264, retro_sscr_333, retro_sscr_711, retro_sscr_738,
Ictidomys tridecemlineatus	ENSSTOG00000008996	ortholog_one2one	5 retrogenes	retro_itri_1011, retro_itri_1905, retro_itri_329, retro_itri_493, retro_itri_881,
Tupaia belangeri	ENSTBEG00000007717	ortholog_one2one	7 retrogenes	retro_tbel_1777, retro_tbel_2022, retro_tbel_3850, retro_tbel_3913, retro_tbel_4204, retro_tbel_661, retro_tbel_902,
Tarsius syrichta	ENSTSYG00000013114	ortholog_one2one	11 retrogenes	retro_tsyr_133, retro_tsyr_1352, retro_tsyr_1447, retro_tsyr_1460, retro_tsyr_1712, retro_tsyr_1900, retro_tsyr_1967, retro_tsyr_247, retro_tsyr_51, retro_tsyr_887, retro_tsyr_904,
Tursiops truncatus	ENSTTRG00000016321	ortholog_one2one	3 retrogenes	retro_ttru_1168, retro_ttru_1435, retro_ttru_737,
Vicugna pacos	ENSVPAG00000001463	ortholog_one2one	5 retrogenes	retro_vpac_117, retro_vpac_247, retro_vpac_415, retro_vpac_473, retro_vpac_525,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ecab_170	75.00	52.98	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ecab_304	68.75	52.98	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ecab_696	68.09	62.25	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ecab_777	67.50	52.98	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ecab_804	71.60	52.98	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ecab_822	79.43	92.72	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ecab_891	67.50	52.98	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ecab_954	72.50	52.98	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ecab_1037	72.50	52.98	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ecab_1047	66.25	52.98	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ecab_1065	73.75	52.98	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ecab_1066	73.75	52.98	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSECAG00000014928 retrocopies

Parental gene:	RPS13, ENSECAG00000014928
Aliases:	None
Description:	ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]
Organism:	*Horse (Equus caballus)*
Coordinates:	7:85440820..85443538(-)

Parental gene:

RPS13, ENSECAG00000014928