RetrogeneDB ID: | retro_shar_183 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834577.1:375756..376158(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSHAG00000004052 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 63.77 % |
Parental protein coverage: | 85.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | PTRRAQWLKLTSDDVKEQI-YKLAKKGPQA-SQIGVI-LRDSHGVAQVRFVTGNKILRILKSKGLAPD-L |
P.....WLK.TS.D.KE.I.YKL...GP...SQ...I.LRDS.G..QV.FV.G.KI.RILKSKGLAPD.. | |
Retrocopy | PRSVPMWLKITSADIKELI>YKLSQEGPET>SQVTPI>LRDSQGLPQVCFVIGSKIVRILKSKGLAPD>V |
Parental | PEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILNESRIHR-LARYYKTKRVLPPNWKYESSTASALVA |
P.DLY.LI.K.VAV.KHLE.NRKDKDSKF.LIL..S.I...L..Y.KTK.VLP.NWKY.S..ASALVA | |
Retrocopy | PKDLYRLISKNVAV*KHLEKNRKDKDSKFHLILK*SYIQH<LIQY*KTKKVLPLNWKYKSFSASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |