RetrogeneDB ID: | retro_btau_46 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:22813837..22814293(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000003937 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSBTAG00000040308 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX8] |
Percent Identity: | 98.67 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MGRMHAPGK.LSQSALPYRRSVPTWLKLT.DDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK | |
Retrocopy | MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK | |
Retrocopy | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
Parental | YESSTASALV |
YESSTASALV | |
Retrocopy | YESSTASALV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 4 .18 RPM | 93 .87 RPM |
ERP005899_muscle | 2 .80 RPM | 575 .35 RPM |
SRP017611_brain | 0 .41 RPM | 33 .21 RPM |
SRP017611_kidney | 1 .01 RPM | 99 .40 RPM |
SRP017611_liver | 0 .91 RPM | 82 .00 RPM |
SRP030211_testis | 0 .25 RPM | 36 .04 RPM |