RetrogeneDB ID: | retro_sscr_1209 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:88607196..88607551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSSSCG00000013381 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:P62279] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 78.43 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | DDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRK |
DDVKEQIYK.AK..LTPSQIG.ILR..HG.AQV.FVTGN.ILRIL..K.........L.....K.VA... | |
Retrocopy | DDVKEQIYKQAK*VLTPSQIGMILRGLHGIAQVCFVTGNEILRILSPKNMS*SSRGSL-SFVEKEVAL*R |
Parental | HLERNRKDKDAKFRLILIESRIHRLARYYKTKRV-LPPNWKYESSTA-SALV |
H.ERNR.DKDAKF..I.IES.I......Y.TK.V.LPPNWKY.SSTA.SALV | |
Retrocopy | HIERNRNDKDAKFQRIWIESGIYQFSQNY*TK*V<LPPNWKYKSSTA<SALV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 387 .97 RPM |
SRP014902_testis | 0 .00 RPM | 276 .95 RPM |
SRP018288_heart | 0 .00 RPM | 294 .10 RPM |
SRP018288_kidney | 0 .00 RPM | 246 .76 RPM |
SRP018288_liver | 0 .00 RPM | 239 .22 RPM |
SRP018288_lung | 0 .00 RPM | 108 .85 RPM |
SRP018856_adipose | 0 .00 RPM | 271 .12 RPM |
SRP035408_brain | 0 .00 RPM | 90 .96 RPM |
SRP035408_liver | 0 .00 RPM | 76 .62 RPM |