RetrogeneDB ID: | retro_mmus_2642 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:30987078..30987361(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 61.62 % |
Parental protein coverage: | 64.24 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | YKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRIL-KSKGLA-PDLPEDLYHLIKKAVAVRKHLERN |
YKL..K..TPSQ..V.LRDS.G.AQ..FVT.NKIL..L..S.GLA.P..P...Y..IKKAV.V.KH.ERN | |
Retrocopy | YKLTQKRPTPSQVSVFLRDS*GAAQIHFVTSNKIL*VL<YSQGLA<PGSPQ--YRSIKKAVVVHKHPERN |
Parental | RKDKDAKFRLILIESRIHRLARYYKTKRV |
R..KDA.F.LILIESR.H.LA.YY.T..V | |
Retrocopy | RREKDAEFHLILIESRLH*LACYYETSQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .02 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |